I have 91 2wd I just did a leaf spring flip and my axle is literally a couple inches from the frame now it looks like my axle doesn't seem like its back far enough me seems like driveshaft is to long any advice or input to help me out here?

 

I've heard of leaf spring flips on old hot rods. Never on a "modern" vehicle. I wouldn't think there would be clearance without the bed being off on a Yota. I'd like to see pics as well.
To answer your question though, if the driveshaft is too short or long it can be made to the right length by a good machine shop or place that does axles/ drivelines. You can also go with a slip yoke setup. A good driveline place will be able to get you set up

 

all be baller and run a square drive shaft lol

 

The angle between the output on the transmission and the pinion/flange on the diff need to be within a certain spec